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Importing a Dataset

This guide shows how to import a Dataset, in Excel format, into the Metadata Exchange as a "Data Model".
At the homepage:

Click the login button to see the following screen:

Login to the MDX using your credentials.
You will see the dashboard:


Click the import menu button to open the import menu:

Select "Import Excel" to get to the following screen:

Here you can provide an Excel file which will be imported and converted into a Data Model. The name of the Data Model may be specified in the first field under "Model Name". If this is not provided, a name will be extracted from the filename of the Excel file.
An example Excel file is available here (a snapshot of a version of the LOINC dataset):

In addition to the Excel file you will also need to provide a "Headers Map" such as the one below (in the "Excel Config XML File" section). This "Headers Map" tells the Exchange which columns should become what sort of Catalogue Element.

  • For example, in LOINC,
    • "CLASS" becomes a "dataClassName"/"Data Class Name" (the name of a Data Class),
    • and "Component" becomes a "dataElementName"/"Data Element Name" (the name of a Data Element).
    • LOINC_NUM becomes the "dataElementID" (the id of a dataElement).
    • Many columns become metadata entries for particular
  • Generally it is assumed that a row of the spreadsheet represents one "Data Element", possibly with an associated "Data Type" and "metadata", and belonging to a "Data Class".

Example Spreadsheet and XML Headers Map

A fragment of the example spreadsheet, and the whole associated XML Header Map are shown below:

LOINC_NUM

COMPONENT

PROPERTY

TIME_ASPCT

SYSTEM

SCALE_TYP

METHOD_TYP

CLASS

VersionLastChanged

CHNG_TYPE

DefinitionDescription

STATUS

CONSUMER_NAME

CLASSTYPE

FORMULA

SPECIES

EXMPL_ANSWERS

SURVEY_QUEST_TEXT

SURVEY_QUEST_SRC

UNITSREQUIRED

SUBMITTED_UNITS

RELATEDNAMES2

SHORTNAME

ORDER_OBS

CDISC_COMMON_TESTS

HL7_FIELD_SUBFIELD_ID

EXTERNAL_COPYRIGHT_NOTICE

EXAMPLE_UNITS

LONG_COMMON_NAME

UnitsAndRange

DOCUMENT_SECTION

EXAMPLE_UCUM_UNITS

EXAMPLE_SI_UCUM_UNITS

STATUS_REASON

STATUS_TEXT

CHANGE_REASON_PUBLIC

COMMON_TEST_RANK

COMMON_ORDER_RANK

COMMON_SI_TEST_RANK

HL7_ATTACHMENT_STRUCTURE

EXTERNAL_COPYRIGHT_LINK

PanelType

AskAtOrderEntry

AssociatedObservations

VersionFirstReleased

ValidHL7AttachmentRequest

10000-8

R wave duration.lead AVR

Time

Pt

Heart

Qn

EKG

EKG.MEAS

2.48

MIN

 

ACTIVE

 

2

 

 

 

 

 

Y

 

Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-AVR; R wave dur L-AVR; Random; Right

R wave dur L-AVR

Observation

 

 

 

s

R wave duration in lead AVR

 

 

s

 

 

 

 

0

0

0

 

 

 

 

 

1.0i

 

10001-6

R wave duration.lead I

Time

Pt

Heart

Qn

EKG

EKG.MEAS

2.48

MIN

 

ACTIVE

 

2

 

 

 

 

 

Y

 

Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-I; R wave dur L-I; Random; Right

R wave dur L-I

Observation

 

 

 

s

R wave duration in lead I

 

 

s

 

 

 

 

0

0

0

 

 

 

 

 

1.0i

 

10002-4

R wave duration.lead II

Time

Pt

Heart

Qn

EKG

EKG.MEAS

2.48

MIN

 

ACTIVE

 

2

 

 

 

 

 

Y

 

2; Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-II; R wave dur L-II; Random; Right

R wave dur L-II

Observation

 

 

 

s

R wave duration in lead II

 

 

s

 

 

 

 

0

0

0

 

 

 

 

 

1.0i

 

10003-2

R wave duration.lead III

Time

Pt

Heart

Qn

EKG

EKG.MEAS

2.48

MIN

 

ACTIVE

 

2

 

 

 

 

 

Y

 

3; Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-III; R wave dur L-III; Random; Right

R wave dur L-III

Observation

 

 

 

s

R wave duration in lead III

 

 

s

 

 

 

 

0

0

0

 

 

 

 

 

1.0i

 

10004-0

R wave duration.lead V1

Time

Pt

Heart

Qn

EKG

EKG.MEAS

2.48

MIN

 

ACTIVE

 

2

 

 

 

 

 

Y

 

Cardiac; Durat; ECG; EKG.MEASUREMENTS; Electrocardiogram; Electrocardiograph; Hrt; Painter's colic; PB; Plumbism; Point in time; QNT; Quan; Quant; Quantitative; R prime; R' wave dur L-V1; R wave dur L-V1; Random; Right

R wave dur L-V1

Observation

 

 

 

s

R wave duration in lead V1

 

 

s

 

 

 

 

0

0

0

 

 

 

 

 

1.0i

 

<dataClassID></dataClassID>
<dataClassName>CLASS</dataClassName>
<dataClassDescription></dataClassDescription>
<dataElementID>LOINC_NUM</dataElementID>
<dataElementName>COMPONENT</dataElementName> <!-- must occur-->
<dataElementDescription>LONG_COMMON_NAME</dataElementDescription>
<dataElementMultiplicity></dataElementMultiplicity>
<dataTypeID></dataTypeID>
<dataTypeName>SCALE_TYP</dataTypeName>
<dataTypeDescription></dataTypeDescription>
<dataTypeRule></dataTypeRule>
<dataTypeEnums></dataTypeEnums>
<measurementUnitID></measurementUnitID>
<measurementUnitName></measurementUnitName>
<measurementUnitSymbol>EXAMPLE_UCUM_UNITS</measurementUnitSymbol>
<metadata>PROPERTY</metadata> <!-- can have multiple -->
<metadata>TIME_ASPCT</metadata>
<metadata>SYSTEM</metadata>
<metadata>METHOD_TYP</metadata>
<metadata>VersionLastChanged</metadata>
<metadata>CHNG_TYPE</metadata>
<metadata>DefinitionDescription</metadata>
<metadata>STATUS</metadata>
<metadata>CONSUMER_NAME</metadata>
<metadata>CLASSTYPE</metadata>
<metadata>FORMULA</metadata>
<metadata>SPECIES</metadata>
<metadata>EXMPL_ANSWERS</metadata>
<metadata>SURVEY_QUEST_TEXT</metadata>
<metadata>SURVEY_QUEST_SRC</metadata>
<metadata>UNITSREQUIRED</metadata>
<metadata>SUBMITTED_UNITS</metadata>
<metadata>RELATEDNAMES2</metadata>
<metadata>SHORTNAME</metadata>
<metadata>ORDER_OBS</metadata>
<metadata>CDISC_COMMON_TESTS</metadata>
<metadata>HL7_FIELD_SUBFIELD_ID</metadata>
<metadata>EXTERNAL_COPYRIGHT_NOTICE</metadata>
<metadata>EXAMPLE_UNITS</metadata>
<metadata>UnitsAndRange</metadata>
<metadata>DOCUMENT_SECTION</metadata>
<metadata>EXAMPLE_SI_UCUM_UNITS</metadata>
<metadata>STATUS_REASON</metadata>
<metadata>STATUS_TEXT</metadata>
<metadata>CHANGE_REASON_PUBLIC</metadata>
<metadata>COMMON_TEST_RANK</metadata>
<metadata>COMMON_ORDER_RANK</metadata>
<metadata>COMMON_SI_TEST_RANK</metadata>
<metadata>HL7_ATTACHMENT_STRUCTURE</metadata>
<metadata>EXTERNAL_COPYRIGHT_LINK</metadata>
<metadata>PanelType</metadata>
<metadata>AskAtOrderEntry</metadata>
<metadata>AssociatedObservations</metadata>
<metadata>VersionFirstReleased</metadata>
<metadata>ValidHL7AttachmentRequest</metadata>

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